modesticaldum. The growth on D-ribose

confirms the proposed function of a putative ribose ABC transporter (rbsDACB, OSI-027 HM1_2417 – HM1_2420) and ribokinase (rbsK, HM1_2416) through genome annotation, and growth supported by D-ribose, D-glucose and D-fructose suggests that annotated EMP and non-oxidative pentose phosphate pathways in H. modesticaldum are active in carbohydrate metabolism. As D-fructose and D-glucose are polar molecules, glucose, fructose or hexose transporter proteins are Anlotinib required to move those molecules across the cell membrane into the cells. No known hexose transporter has been reported for H. modesticaldum, which may partially explain slower growth on D-hexose than on D-ribose. It remains to be determined if the putative ribose transporter of H. modesticaldum functions as a

hexose transporter, since no ribose transporter has been reported previously to accommodate a hexose. Metabolism of carbohydrate through the EMP pathway supplies 2 ATP and 2 NADH to the cells, which are significant for the energy metabolism of H. modesticaldum, because essential genes in the oxidative pentose phosphate and ED pathways, which provide reducing equivalents during carbohydrate metabolism, are absent in the genome. Moreover, utilization of glucose can provide an additional path for H2 production in H. modesticaldum as reported in some non-phototrophic bacteria [28]. The biological significance of the alternative CO2-assimilation pathways Proteases inhibitor The CO2-anaplerotic pathways are known to replenish the intermediates of TCA cycle, so that removal of the intermediates for synthesizing cell materials will not significantly slow down the metabolic flux through the TCA cycle. Our recent studies showed that the photoheterotrophic bacterium R. denitrificans uses the anaplerotic pathways to assimilate CO2. All of the genes encoding the enzymes for CO2-anaplerotic pathways, PEP carboxylase, PEP carboxykinase, pyruvate carboxylase and malic enzyme, have been annotated in the R. denitrificans genome, and activities of these enzymes have been detected.

The alternative CO2-fixation pathways account for making up 10-15% cellular proteins of R. denitrificans [9]. Our studies presented here also suggest that H. modesticaldum uses two anaplerotic Alanine-glyoxylate transaminase pathway, PEP carboxykinase (PEPCK) and pyruvate:ferredoxin oxidoreductase (PFOR), for assimilating CO2. What is the biological importance of PEPCK and PFOR in H. modesticaldum? Although the anaplerotic CO2-assimilation cannot support (photo)heterotrophic growth in the way that the autotrophic CO2-fixation supports (photo)autotrophs, these two CO2-anaplerotic pathways are critical for the carbon metabolism of H. modesticaldum (see Figure 5). First, the CO2-assimilation by PFOR catalyzes the formation of pyruvate from acetyl-CoA, a reaction that cannot be catalyzed by pyruvate dehydrogenase.