Of those two populations the lighter one showed a PsbS band while

Of those two populations the lighter one showed a PsbS band while interestingly the PsbO band was missing (Fig. 2c, d). On the contrary, the PSIImM fraction not able to bind PsbS showed a typical PsbO band (Fig. 2c), suggesting that only one fraction of the total monomers were able to bind PsbS in the PSIImM samples (Fig. 2d). Thus, in the thylakoid membrane PsbS is found in different forms and associations, but especially the

results from the second dimension find more SDS-PAGE provide a strong indication of a specific binding of PsbS to monomeric PSII (Fig. 2). Table 1 Subunit composition of PSII-A and PSII-B analysed by ESI LC–MS/MS peptide mass finger printing (MS) and western blots in comparison to thylakoids (Thyl). For western blots equal amounts of Chl were load Rates of oxygen evolution of the PSII preparations In order to analyze if the isolated fractions were functionally active we measured

the oxygen evolution of the PSIIm, PSIId, and PSIImM samples as well as of both samples obtained after the first purification step (NiNTA elution from protocols A and B). As PSIIm and PSIId are stable and their oligomeric state is not exchanged over time, we could independently determine their activities observing for both high rates of oxygen evolution (Table 2). Surprisingly in the milder extraction, yielding mainly monomeric PSII, only low rates of oxygen evolution (58 μmol O2/mg chl h) were observed indicating a much Tobramycin lower activity Selleck Natural Product Library for the PSIImM sample compared to the PSIIm sample (Table 2). Table 2 Rates of oxygen evolution from isolated His-tagged PSII cores, values are expressed in μmol O2/mg Chl h Preparation Chromatography step NiNTA S.E.C. Single

pool 1st pool 2nd pool PSII-A 826 ± 23 (PSIId, PSIIm, RC-CP47, RC) 1100 ± 22 (Veliparib enriched PSIId) 544 ± 31 (enriched PSIIm) PSII-B 71 ± 4 (PSIImM, PSIId in traces) – 58 ± 5 (PSIImM) Values represent means ± standard deviations of 3 independent measurements from the same preparation Spectroscopy of the two PSII preparations Absorption spectra for the PSIIm and PSIId fractions and for the PSIImM sample were recorded in the wavelength range between 370 and 750 nm and normalized to their Qy absorption maximum to facilitate their comparison (Fig. 4). Generally, the three spectra showed a comparable absorption profile regarding the Qx and the Qy regions. However, the intensities differed significantly in the wavelength range between 450 and 520 nm. In this region the absorbance intensity was the lowest for the monomeric PSIImM, followed by PSIId and finally PSIIm. Furthermore, difference spectra between PSIImM and PSIIm feature several characteristic bands. In particular the absorbance at 470 and 490 nm is enhanced in PSIIm, accompanied by minor changes in the Chl b and Chl a Qy region (Fig. 4 inset).

Scratched monolayer cells with 200 μl pipette tip, washed cells 3

Scratched monolayer cells with 200 μl pipette tip, washed cells 3 times with PBS, and added 2 ml medium without FBS into each well. The values of scratch were measured at 0 h and 24 h after scratching by Image Pro-Plus 6.0 system. Transwell migration assay Transwell chambers (8 μm pore size; Millipore, USA) were also used to measure cell migration. Seeded 2 × 105 cells into each upper chamber with 200 μl fresh medium without FBS, added 500 μl medium

GDC-0973 purchase with 20% FBS into each lower chamber, three duplicate wells were set up for each group. After 12 h, fixated cells with methanol for 5 min, and stained cells by hematoxylin for 30 min. Cleaned upper chamber and inverted the chamber, counted cell numbers on the lower membrane under high power lens (× 400) in five random visual fields. Matrigel invasion assay Transwell chamber (8 μm pore size; PI3K inhibitors ic50 Millipore, USA) covered with 100 μl of 1 mg/ml Matrigel

(BD, USA) was used to measure cell invasive ability. Seeded 1 × 105 cells into each upper chamber with 200 μl fresh medium without FBS, added 500 μl medium with 20% FBS into each lower chamber, three duplicate wells were set up for each group. After 12 h, fixated cells with methanol for 5 min, and stained cells by hematoxylin for 30 min. Cleaned upper chamber and inverted the chamber, counted cell numbers on the lower membrane under high power lens (× 400) in five random visual fields. Xenograft model assay The experimental protocol was approved by Zhengzhou University Ethics Committee for Animal PI3K inhibitor Experimentation. Female BALB/c nu/nu mice (4-5 weeks old, 13-17 g) were purchased from Vital River Laboratory Animal Technology Co., Ltd (Peking, China), and were randomly assigned into four groups with 4 mice per group. About 1 × 107 cells were suspended in 0.2 ml PBS and injected subcutaneously into one mouse. The tumors were monitored every 5 days beginning at day 5 by measuring two perpendicular diameters with a caliper. The mice were sacrificed on the 35th day after injection, tumors were dissected and measured, and tumor volume in mm3 was calculated by the formula: volume = (width)2 × length/2 [10]. Statistical analysis Average values were expressed HSP90 as

mean ± standard deviation (SD). Count data were analyzed by χ2 test. Measurement data were analyzed by one-way ANOVA and Bonferroni test using SPSS 17.0 software package. Difference was considered significant when P value was less than 0.05. Results Overexpressions of MACC1 in ovarian cancer tissues The positive rates of MACC1 in normal ovary, benign ovarian tumor and ovarian cancer tissues were detected by immunohistochemistry (Table 1). Compared to normal ovary and benign ovarian tumor, expressions of MACC1 were obviously up-regulated in ovarian cancer tissues (Figure 1), which showed abnormal expression of MACC1 might be associated with ovarian cancer. Table 1 Expressions of MACC1 protein in different ovarian tissues analyzed by immunohistochemistry.

Transforming growth factor-β apparently plays a role in both the

Transforming growth factor-β apparently plays a role in both the emergence of SMF and in the changes in the malignant cells. This is supported by the observed trend of its higher expression in cases with abundant SMF and frequent tumor cells co-expressing epithelial membrane antigen and α-smooth muscle actin. The present results justify investigations on a larger scale to assess whether the frequency of the carcinoma cells undergoing such modifications may be correlated with variations in the biological behavior of oral squamous cell carcinoma and clinical outcomes [37]. Realizing 4-Hydroxytamoxifen molecular weight that the SMF are part of the tumor that contribute to its progression and that the malignant cells are in

a dynamic state of changing phenotypes toward a mesenchymal differentiation could help explain the partial response to routine anti-cancer treatment approaches as is often seen in oral squamous cell carcinoma, implying that future cancer therapies would have to target stromal constituents and should not focus solely on “conventional” cancer cells. Acknowledgements The authors would like

to thank Mrs. Hana Vered for technical assistance and Mrs. Esther Eshkol for editorial assistance. The study was supported by the Vladimir Schreiber Research Fund and the Tibor Bilha and Elizabeth Rubinstein De Bilha Research Fund, Sackler Faculty of Medicine, Tel Aviv University. EPZ5676 concentration Open Access This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which Selleckchem Alpelisib permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited. References 1. Kademani D (2007) Oral Cancer. Mayo Clin Proc 82(7):878–887 (erratum: Mayo Clin Proc 2007 82(8):1017) 2. Choi S, Myers JN (2008) Molecular pathogenesis of Glutathione peroxidase oral squamous cell carcinoma: implications for therapy. J Dent Res 87(1):14–32CrossRefPubMed 3. Kalluri R, Zeisberg M (2006) Fibroblasts in cancer. Nat Rev Cancer 6(5):392–401CrossRefPubMed 4. Tlsty

TD, Hein PW (2001) Know thy neighbor: stromal cells can contribute oncogenic signals. Curr Opin Genet Dev 11(1):54–59CrossRefPubMed 5. Elenbaas B, Weinberg RA (2001) Heterotopic signaling between epithelial tumor cells and fibroblasts in carcinoma formation. Exp Cell Res 264(1):169–184CrossRefPubMed 6. Mueller MM, Fusening NE (2004) Friends or foes–bipolar effects of the tumor stroma in cancer. Nat Rev Cancer 4(11):839–849CrossRefPubMed 7. Zeisberg EM, Potenta S, Xie L et al (2007) Discovery of endothelial to mesenchymal transition as a source for carcinoma-associated fibroblasts. Cancer Res 67(21):10123–10128CrossRefPubMed 8. Tomasek JJ, Gabbiani G, Hinz B et al (2002) Myofibroblasts and mechano-regulation of connective tissue remodeling. Nat Rev Mol Cell Biol 3(5):349–363CrossRefPubMed 9.

1967 14 Klein PH, Croft W: Thermal conductivity, diffusivity an

1967. 14. Klein PH, Croft W: Thermal conductivity, diffusivity and expansion of Y 2 O 3 , Y 3 Al 5 O 12 and LaF 3 in the range of 77–300 K. J Appl Phys 1967, 38:1603–1067.CrossRef 15. Wang J, Hu J, Tang D, Liu X, Zhen Z: Oleic acid (OA)-modified LaF3:Er, Yb nanocrystals and their polymer hybrid materials for potential optical-amplification applications. J Mater Chem 2007, 17:1597–1601.CrossRef 16. Auzel F: Upconversion #Selleck Luminespib randurls[1|1|,|CHEM1|]# and anti-stokes processes with f and d ions in solids. Chem Rev 2004, 104:139–174.CrossRef 17. Galceran M, Pujol MC, Aguiló M, Díaz F: Sol–gel modified Pechini method for obtaining nanocrystalline KRE(WO 4 ) 2 (RE = Gd and Yb). J Sol–gel Sci Technol 2007, 42:79–88.CrossRef 18. Galceran M, Pujol MC, Aguiló M, Díaz F:

Synthesis and characterization of nanocrystalline Yb:Lu 2 O 3 by modified Pechini method. Mater Sci Eng 2008, 146:7–15.CrossRef 19. Lehmann V, Föll H: Formation mechanism and properties of electrochemically etched trenches n-type silicon. J Electrochem Soc 1990, 137:653–659.CrossRef

20. Trifonov T, Marsal LF, Rodriguez A, Pallares J, Alcubilla R: Fabrication of two- and three-dimensional photonic crystals by electrochemical etching of silicon. Phys Status Solidi C Citarinostat purchase 2005, 2:3104–3107.CrossRef 21. Marsal LF, Formentín P, Palacios R, Trifonov T, Ferré-Borrull J, Rodriguez A, Pallarés J, Alcubilla R: Polymer microfibres obtained using porous silicon templates. Phys Status Solidi A 2008, 205:2437–2440.CrossRef 22. Rodriguez-Carvajal J: Reference Guide for the Computer Program Fullprof. Saclay, France: Laboratorie León Brillouin. CEA-CNRS; 2000. 23. Rietveld HM: A profile refinement method for nuclear and magnetic structures. J Appl Crystallogr 1969, 2:65–71.CrossRef Montelukast Sodium 24. Cullity BD: Element of X-Ray Diffraction. New York: Addison-Wesley; 1978. 25. Shannon RD: Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides. Acta Crystallogr A 1976, 32:751–767.CrossRef 26. Söderlund J, Kiss LB, Niklasson GA, Granqvist CG: Lognormal size distributions in particle growth processes without coagulation. Phys Rev Lett 1998, 80:2386–2388.CrossRef 27. Granqvist

CG, Buhrman RA: Ultrafine metal particles. J Appl Phys 1976, 47:2200–2220.CrossRef 28. Donnay JDH, Harker D: A new law of crystal morphology extending the Law of Bravais. Am Mineral 1937, 22:446–467. 29. Yang J, Li C, Quan Z, Zhang C, Yang P, Li Y, Yu C, Lin J: Self-assembled 3D flowerlike Lu 2 O 3 and Lu 2 O 3 :Ln 3+ (Ln = Eu, Tb, Dy, Pr, Sm, Er, Ho, Tm) microarchitectures: ethylene glycol-mediated hydrothermal synthesis and luminescent properties. J Phys Chemy C 2008, 112:12777–12785.CrossRef 30. Donegá CM, Zych E, Meijerink A: Luminescence of Lu 2 O 3 :Tm 3+ nanoparticles. Mater Res Soc Symp Proc 2001, 667:G4.4.1-G4.4.6.CrossRef 31. Müller HD, Schneider J, Lüth H, Strümpler R: Cathodoluminescence study of erbium in La 1− x Er x F 3 epitaxial layers on Si(111). Appl Phys Lett 1990, 57:2422–2424.CrossRef 32.

Shown are the mean numbers

Shown are the mean P005091 solubility dmso numbers Batimastat supplier of colonies ± SEM of 3-4 of independent observations with duplicates or triplicates for each

observation. **: P < 0.01 compared to either Fe alone or 3 μM LS081 alone; ***: p < 0.001 compared to Fe alone or 10 μM LS081 alone by 1-way ANOVA with Newman-Keuls's posttests. Effect of the iron facilitator LS081 on the level of HIF-1α and -2α protein We investigated if the iron facilitating compound LS081 would affect the level of the transcription factors HIF-1α and -2α. Because the level of HIF-1α in PC-3 cells was too low to be detected by Western blot analysis, especially when cultured at normal oxygen concentrations, we used the prostate cancer cell line DU145 cultured in 1% oxygen as this cell line expressed levels Ganetespib chemical structure of HIF-1α that could be detected by Western blot analysis. LS081 plus Fe significantly reduced the level of HIF-1α in DU 145 cells (Figure 6A). The effect of LS081 on the level of HIF-2α was also examined using breast cancer cell line MDA-MB-231, because the levels of HIF-2α were too low in prostate cancer cell lines to be detected by Western blot analysis. LS081 significantly reduced HIF-2α expression in MDA-MB-231 cells cultured under normoxic conditions in medium containing 10% FCS (Figure 6B). Figure 6 The effect of LS081 on the expression of HIF1α and HIF2α. MDA-MB231 and DU145

cells were treated with 10 μM LS081 in 10% FCS-RPMI1640 ± 2 μM ferric ammonium citrate for 16 hr before harvesting for Western blot detection of HIF-1α and 2α as described in the Methods. The Western blots were quantitated by densitometry and the amounts of HIF as the ratio of

HIF-1α or HIF-2α to the actin loading control were expressed relative to the DMSO control. The left panels are representative Western blots. A, HIF-1α was detected in DU145 cells cultured at 1% oxygen concentration (hypoxic). In B, HIF-2α was detected in MDA-MB231 cells grown in normal oxygen tension (21%). The right panels show the reduction of HIF-1α or -2α in the treated cells compared to control click here (means ± SEM of 3-4 experiments). *: p < 0.05; **: P < 0.01 compared to DMSO by 1-way ANOVA with Tukey’s posttests. Discussion As noted by Wessling-Resnik and colleagues in their search for iron uptake inhibitors chemical genetics, i.e. the use of small molecules to perturb a physiologic system, has the ability to shed light on mechanisms of the pathway that is being disturbed [25]. Additionally, compounds that perturb iron uptake could have beneficial, medicinal effects. For example, small molecules which stimulate iron absorption might be used as adjuncts to diets that are iron-deficient. Conversely, molecules that blocked iron uptake might counter the increased iron absorption and resultant iron toxicity often seen in widely prevalent diseases such as sickle cell disease and the thalassemias.

Briefly, 100 mg of extracted and purified rhamnolipids were suspe

Briefly, 100 mg of extracted and purified rhamnolipids were suspended in 5 ml of 50 mM sodium acetate buffer, pH 4.1. To this solution was added 100 mg of naringinase from Penicillum decumbens (Sigma). The mixture was then kept at 50°C for 2 h with gyratory shaking (240 rpm), at which point 20 ml of buffer were added. After 24 h, another 150 mg of naringinase were added as well as 25 ml of buffer. The reaction was kept under these conditions for 8 days. A final 50 mg of naringinase

in 20 ml of buffer were added to the mixture and was left for another 24 h. Thereafter, the solution was acidified to pH 3-4 using concentrated HCl and extracted three times with ethyl acetate. The fatty acid moieties generated by naringinase cleavage were then analyzed by LC/MS after the extract had been dried and evaporated. CMC – Surface tension assay Critical micelle concentration and surface tension were measured by the du Noüy ring PHA-848125 chemical structure method [50] using a surface tensiometer (Fisher). The instrument was calibrated against water and assays were performed in triplicate at room temperature. Swarming motility For swarming PLX3397 datasheet assays, cultures were grown overnight, diluted

in fresh medium and subcultured until OD600~6.0 was reached. Swarm plates were prepared as follows: freshly autoclaved medium consisting of NB supplemented with 0.5% dextrose (Fisher) and 0.5% Bacto-agar (Difco) was poured into standard Petri dishes and dried under laminar flow for 30 min, as before [42]. Immediately following the drying period, plates were inoculated at their center with 5 μl of bacterial culture and placed at 30°C. For swarming phenotype restoration, 1, 5, 10 and 25 mg/L of purified B. thailandensis E264 rhamnolipids were deposited (10 μl) at the

center of respective plates and left to dry for 15 minutes before spot inoculation with swarming-deficient ΔrhlA mutant strains. For cross-feeding experiments, either equal parts of the cultures were mixed before being plated at the center on the swarm plate, or cultures were simply spotted side-by-side. Acknowledgements Special thanks to Marie-Christine Groleau and Ludovic Vial for insightful Loperamide comments and technical assistance as well as all members of ED laboratory for helpful discussions. This work was funded by NSERC discovery grants to FL and ED. DD was recipient of a Master’s Degree scholarship from The Fondation Armand-Frappier. References 1. Jarvis FG, Johnson MJ: A glyco-lipid produced by Pseudomonas aeruginosa. J Am Oil Chem Soc 1949,71(12):4124–4126. 2. Edwards JR, Hayashi JA: Structure of a rhamnolipid from Pseudomonas aeruginosa. Arch Biochem Biophys 1965,111(2):415–421.CrossRefPubMed 3. Kitamoto D, Isoda H, Nakahara T: Functions and potential applications of glycolipid biosurfactants–from energy-saving materials to gene delivery carriers. J Biosci Bioeng 2002,94(3):187–201.PubMed 4. Rahman PKSM, Gakpe E: Production, characterisation and applications of Alisertib biosurfactants – Review.

Cell proliferation was inhibited obviously when c-FLIP expression

Cell proliferation was inhibited obviously when c-FLIP expression was knocked down by siRNA. Our data showed that si-526-siRNA significantly decreased the growth rate of 7721 cells, with a >50% decrease after 3 days repeatedly in three separate experiments (Figure.

4). Figure 4 Cell viability was accessed by cell counting. The study showed that 7721 cell viability was reduced by the transfetion NSC23766 purchase with recombinant iRNA vectors. pSuper-Si1 had more significant effect on the reduction of the cell viability. Then, the cells were assayed by the TUNEL method to assess the drug-induced apoptosis. Positive TUNEL staining would be indicative of the DNA fragmentation that was characteristic of apoptosis. Without c-FLIP RNAi, the fewer 7721 cells were TUNEL positive. In contrast, in cells transfected with the specific siRNA vector, pSuper-Si1, the apoptosis induced by treatment with doxorubicin was significantly elevated (Figure. 5).

Figure 5 Cells were assayed Emricasan for apoptosis by the TUNEL method and photographed by fluorescence microscopy at ×100. Green cells are positive for DNA fragmentation, consistent with apoptosis. A: 7721/pSuper-Neg; B: 7721/pSuper-Si1. Discussion Tumor cells have developed different ways to escape apoptosis induced by DR-triggering such as surface DR down-regulation, loss or mutation. Other mechanisms elaborated by tumor cells to develop cell death resistance include aberrant expression of anti-apoptotic molecules such as c-FLIP, Bcl-2, Bcl-xL, survivin and Livin. The current belief holds that perturbations in apoptotic death regulation

constitute a vital step in cancer evolution [17]. Each step in DR-mediated apoptosis is well regulated. c-FLIP is a recently identified intracellular inhibitor of caspase-8 activation that potently inhibits death signaling mediated by all known death receptors, including Fas, TNF-receptor (TNF-R), and TNF-related apoptosis-inducing ligand receptors (TRAIL-Rs). Furthermore, c-FLIP over-expression can activate nuclear factor (NF)-κB activation induced by TNF-α or TRAIL. c-FLIP has a more heptaminol central role in the antiapoptotic NF-kB response than the TRAF/IAP complex. On the other hand, c-FLIP expression is regulated by NF-κB and phosphatidylinostiol-3 kinase (PI-3)/Akt pathways. So, c-FLIP plays an important role in cell survival not simply by inhibiting DR-mediated apoptosis but also by regulating NF-κB activation in human HCCs [10, 18]. Moreover, c-FLIP has recently been shown to be associated with the generation of positive signals for cell proliferation by activation of the Erk pathway through Raf-1 binding [19, 20]. There is increasing evidence that in regard to its anti-apoptotic functions, c-FLIP can be considered as a tumor-progression factor. At present, the role of c-FLIP, as an anti-apoptotic www.selleckchem.com/products/BIRB-796-(Doramapimod).html protein involved in the regulation of the DR extrinsic apoptotic pathway, remains unclear.

35-7 45), pCO2 of 1 7 kPa (4 7-6 4 kPa), pO2 15 2 kPa (10 0-13 3

35-7.45), pCO2 of 1.7 kPa (4.7-6.4 kPa), pO2 15.2 kPa (10.0-13.3 kPa), bicarbonate 4 mmol/L (22–29 mmol/L), base excess of −21.6 mmol/L (−3.0-3.0 mmol/L) and lactate level 6.7 mmol/L. Abdominal ultrasonography and conventional chest X-rays showed no abnormalities except

a bladder selleck chemical retention which was treated. Based on clinical and laboratory findings, a laparotomy was performed with the differential diagnosis of acute mesenterial ischemia. The laparotomy was negative for mesenterial ischemia, but bladder retention of more than one liter was found despite earlier treatment with an urinary catheter. Postoperatively, the patient was admitted into the ICU and the lactate levels increased till 10 mmol/L and thereafter decreased to SB525334 supplier normal values (Figure 2). The CRP buy NVP-HSP990 followed the same pattern (Figure 2). She was hemodynamically

stable with low dosage of vasoactive medication and had mechanical ventilation support for a short period. Also, she developed acute kidney failure. Spontaneous mild correction of renal failure was seen within some days with a normal urine production of 60 ml/hour after administration of Furosemide. Abdominal pains in the right lower abdomen without a focus remained her main complain. After 3 days she was discharged from the ICU. Figure 2 C-reactive protein and lactate concentrations over time of the second case. A C-reactive protein concentrations and B Lactate concentrations A C-reactive protein concentrations and B Lactate concentrations. After admittance into the ICU, the lactate levels increased till 10 mmol/L and thereafter decreased to normal values. The C-reactive protein levels

follow the same pattern. Complementary diagnostic examination by means of a gastroscopy showed a mild gastritis. A new abdominal ultrasonography showed no pathological findings. During the stay on the internal medicine ward a spontaneous recovery of kidney failure was seen and constipation was successfully treated with Movicolon (a polyethylene glycol preparation; PEG 3350). Her abdominal pain decreased but was not totally over. After 11 days of admission, she was discharged. Third case The third patient was a 68 years-old male which presented in the ED with Idoxuridine a productive cough, sore throat and perspiration at night without a fever. Furthermore he developed a generalized rash. He recently spent time abroad (Finland) for construction work. Clinical features at the ED showed petechial rash on the face, extremities and abdomen. Furthermore, an enlarged submandibular lymph node was palpated. Examination of the abdomen was normal without tenderness. Laboratory results demonstrated a thrombocytes count of 20·109/L (normal ref. values: 150-400109/L), hemoglobin concentration of 9.1 mmol/L, leucocytes count of 6.6 mmol/L, CRP 9 mmol/L, bilirubine 24 μmol/L (0.0-20.

Bioinformatics 2001,17(9):847–848 PubMed 83 Gardy JL, Laird MR,

Bioinformatics 2001,17(9):847–848.PubMed 83. Gardy JL, Laird MR, Chen F, Rey S, Walsh CJ, Ester M, CAL-101 mw Brinkman FS: PSORTb

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Appl Environ

Appl Environ Microbiol 1988,54(3):703–711.PubMed 18. Nüsslein K, Tiedje JM: Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition. Appl Environ Microbiol 1998,64(4):1283–1289.PubMed 19. Holben WE, Feris KP, Kettunen A, Apajalahti JH: GC fractionation enhances microbial community diversity assessment and detection of minority populations of bacteria

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patients differs significantly from that of healthy subjects. Gastroenterology 2007,133(1):24–33.CrossRefPubMed 22. Galtier selleck N, Lobry JR: Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes. J Mol Evol 1997,44(6):632–636.CrossRefPubMed 23. Good IJ: The population frequencies of species and the estimation of population parameters. Biometrika 1953, 40:237–264. 24. Schloss PD, Handelsman J: Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl Environ Microbiol 2006,72(10):6773–6779.CrossRefPubMed 25. Wilson KH, Blitchington RB: Human colonic biota studied by ribosomal DNA sequence analysis. Appl Environ Microbiol 1996,62(7):2273–2278.PubMed 26. Suau A, Bonnet R, Sutren M, Godon JJ, Gibson GR, Collins MD, Doré J: Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Methane monooxygenase Microbiol 1999,65(11):4799–4807.PubMed 27. Bonnet R, Suau A, Doré J, Gibson

GR, Collins MD: Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs. Int J Syst Evol Microbiol 2002,52(Pt 3):757–763.CrossRefPubMed 28. Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, Gill SR, Nelson KE, Relman DA: Diversity of the human intestinal microbial flora. Science 2005,308(5728):1635–1638.CrossRefPubMed 29. Li M, Wang B, Zhang M, Rantalainen M, Wang S, Zhou H, Zhang Y, Shen J, Pang X, Zhang M, Wei H, Chen Y, Lu H, Zuo J, Su M, Qiu Y, Jia W, Xiao C, Smith LM, Yang S, Holmes E, Tang H, Zhao G, Nicholson JK, Li L, Zhao L: Symbiotic gut microbes modulate human metabolic phenotypes. Proc Natl Acad Sci USA 2008,105(6):2117–2122.CrossRefPubMed 30. Hayashi H, Sakamoto M, Benno Y: Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods.